SPOTCLUST Complex Families  [Please cite]

This section contains the identified spoligotyping families. Please click here to learn about how a SpolDB3-based model was initialized and here to learn about how Randomly initialized model was seeded.

SpolDB3-based model
Randomly initialized model


EAI3,     LAM3,    Haarlem1,    Beijing,   X2,    LAM4,    T4,    X3,   EAI5,   BCG,    Family 34,   Family 33,  EAI2,   M. africanum,    Family 36,  T3,   LAM9,   LAM8,   Haarlem2,   T1,   LAM10,   Haarlem3,  H37Rv,   T2,   X1,   LAM7,   EAI1,   EAI4,  S,   LAM1,   LAM2,   LAM5,   M. microti,    LAM6



M. tuberculosis EAI4

This is a Sequence Logo of EAI4 spoligotypes. S indicates present spacer, N indicates absent spacer. For more information on sequence logos, please click the link at the bottom of this page. Stability = 0.34

NY State NumberNumber of occurrencesProbabilityBinary formatOctal formatCountry of origin
NY_S00019 57 0.99 1111111111111111111111111001000010111111111 777777774413771 USA/India/NewZealand
NY_S00371 2 0.99 1111111111111111111111010000000000110111111 777777750003371 USA
NY_S00286 3 0.99 1111111111110111111111111001000010111111111 777737774413771 USA
NY_S00455 3 0.98 1111111111111111111111111001000010111110111 777777774413731 USA
NY_S00053 3 0.98 1111111111111111111111111001000010111110011 777777774413711 USA
NY_S00463 2 0.92 1111111111110111111000000001000010111110111 777737400413731 India

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