SPOTCLUST Complex Families  [Please cite]

This section contains the identified spoligotyping families. Please click here to learn about how a SpolDB3-based model was initialized and here to learn about how Randomly initialized model was seeded.

SpolDB3-based model
Randomly initialized model


EAI3,     LAM3,    Haarlem1,    Beijing,   X2,    LAM4,    T4,    X3,   EAI5,   BCG,    Family 34,   Family 33,  EAI2,   M. africanum,    Family 36,  T3,   LAM9,   LAM8,   Haarlem2,   T1,   LAM10,   Haarlem3,  H37Rv,   T2,   X1,   LAM7,   EAI1,   EAI4,  S,   LAM1,   LAM2,   LAM5,   M. microti,    LAM6



Family 34

This is a Sequence Logo of Family 34 spoligotypes. S indicates present spacer, N indicates absent spacer. For more information on sequence logos, please click the link at the bottom of this page. Stability = 0.76

NY State NumberNumber of occurrencesProbabilityBinary formatOctal formatCountry of origin
NY_S00273 28 1.00 1111111111111111101111110000000000000000000 777776770000000 USA/Czech
NY_S00217 24 1.00 1111111111111111111111110000000000000000000 777777770000000 USA/India/Czech
NY_S00528 2 1.00 1111111111111101111111100000000000000000000 777767760000000 Czech
NY_S00703 2 1.00 1111110000000000001111110000000000000000000 770000770000000 USA
NY_S01079 2 0.97 1111111111111111111100000000000000000000000 777777600000000 USA
NY_S00607 2 0.96 1111111111110111111100000000000000000000000 777737600000000 USA

         The Sequence Logo was created using