SPOTCLUST Complex Families  [Please cite]

This section contains the identified spoligotyping families. Please click here to learn about how a SpolDB3-based model was initialized and here to learn about how Randomly initialized model was seeded.

SpolDB3-based model
Randomly initialized model


EAI3,     LAM3,    Haarlem1,    Beijing,   X2,    LAM4,    T4,    X3,   EAI5,   BCG,    Family 34,   Family 33,  EAI2,   M. africanum,    Family 36,  T3,   LAM9,   LAM8,   Haarlem2,   T1,   LAM10,   Haarlem3,  H37Rv,   T2,   X1,   LAM7,   EAI1,   EAI4,  S,   LAM1,   LAM2,   LAM5,   M. microti,    LAM6



Family 36

This is a Sequence Logo of Family 36 spoligotypes. S indicates present spacer, N indicates absent spacer. For more information on sequence logos, please click the link at the bottom of this page. Stability = 0.68

NY State NumberNumber of occurrencesProbabilityBinary formatOctal formatCountry of origin
NY_S00804 2 1.00 0000000000000000000000001111111111111111111 000000007777771 USA
NY_S00576 3 1.00 1110000000000000000000001110011111111111111 700000007177771 USA
NY_S00259 18 1.00 0000000000000000000000001111110100001111111 000000007720771 USA
NY_S01197 2 1.00 0000000000000000000000001111110100001110111 000000007720731 USA
NY_S00418 19 1.00 0000000000000000000000001111111100001111111 000000007760771 USA
NY_S00502 2 1.00 1100000000000000000000000001111100001110111 600000000760731 USA

         The Sequence Logo was created using