SPOTCLUST Complex Families  [Please cite]

This section contains the identified spoligotyping families. Please click here to learn about how a SpolDB3-based model was initialized and here to learn about how Randomly initialized model was seeded.

SpolDB3-based model
Randomly initialized model


EAI3,     LAM3,    Haarlem1,    Beijing,   X2,    LAM4,    T4,    X3,   EAI5,   BCG,    Family 34,   Family 33,  EAI2,   M. africanum,    Family 36,  T3,   LAM9,   LAM8,   Haarlem2,   T1,   LAM10,   Haarlem3,  H37Rv,   T2,   X1,   LAM7,   EAI1,   EAI4,  S,   LAM1,   LAM2,   LAM5,   M. microti,    LAM6



M. tuberculosis LAM7

This is a Sequence Logo of LAM7 spoligotypes. S indicates present spacer, N indicates absent spacer. For more information on sequence logos, please click the link at the bottom of this page. Stability = 0.40

NY State NumberNumber of occurrencesProbabilityBinary formatOctal formatCountry of origin
NY_S00081 12 1.00 1111100000000000011000000000000000000011111 760001400000171 USA
NY_S00515 14 1.00 1111111100011100000000000000000000000001111 776160000000071 USA
NY_S00663 17 1.00 1111111100011111111000000000000000000011111 776177400000171 USA
NY_S01033 2 1.00 1110000000000111110000000000000100001110000 700037000020700 USA
NY_S00350 3 1.00 1111000000000000000000001000000100001111111 740000004020771 Czech
NY_S00375 4 0.93 1111111100000000000000000000000000000011111 776000000000171 USA/NewZealand
NY_S01015 3 0.89 1101111000000000000000000000000000000011111 674000000000171 USA

         The Sequence Logo was created using