SPOTCLUST Complex Families  [Please cite]

This section contains the identified spoligotyping families. Please click here to learn about how a SpolDB3-based model was initialized and here to learn about how Randomly initialized model was seeded.



EAI3,     LAM3,    Haarlem1,    Beijing,   X2,    LAM4,    T4,    X3,   EAI5,   BCG,    Family 34,   Family 33,  EAI2,   M. africanum,    Family 36,  T3,   LAM9,   LAM8,   Haarlem2,   T1,   LAM10,   Haarlem3,  H37Rv,   T2,   X1,   LAM7,   EAI1,   EAI4,  S,   LAM1,   LAM2,   LAM5,   M. microti,    LAM6



M. tuberculosis LAM8

This is a Sequence Logo of LAM8 spoligotypes.
S indicates present spacer, N indicates absent spacer. For more information on sequence logos, 
please click the link at the bottom of this page. Stability = 0.63

NY State NumberNumber of occurrencesProbabilityBinary formatOctal formatCountry of origin
NY_S00355 4 1.00 1111111111111111111000000000000000000111111 777777400000371 USA
NY_S00601 19 1.00 1111111111111111111100000000001100001111111 777777600060771 USA
NY_S00507 4 1.00 1111111111111111111100000000000000001111111 777777600000771 USA
NY_S00901 2 1.00 1111111111111110000000000000000000001110111 777770000000731 USA
NY_S00756 6 1.00 0000111111101111111010000000000100001111111 037677500020771 USA
NY_S00529 6 0.99 1111111111111111111110000000000100001111111 777777700020771 USA/Czech
NY_S00444 2 0.95 1000111111111111111100001100001100001100000 437777606060600 USA
NY_S00422 2 0.94 1111111111111111111100001100001100001110111 777777606060731 USA
NY_S00269 10 0.94 1111111111111111111100001100001100001111111 777777606060771 USA/Zambia
NY_S00527 3 0.87 1111111111111111111110001000000100001111111 777777704020771 USA/Czech


         The Sequence Logo was created using