SPOTCLUST Complex Families  [Please cite]

This section contains the identified spoligotyping families. Please click here to learn about how a SpolDB3-based model was initialized and here to learn about how Randomly initialized model was seeded.

Family N1,     Family N2,     Family N3,     Family N4,     Family N5,     Family N6,     Family N7,     Family N8,     Family N9,     Family N10,     Family N11,     Family N12,     Family N13,     Family N14,     Family N15,     Family N16,     Family N17,     Family N18,     Family N19,     Family N20,     Family N21,     Family N22,     Family N23,     Family N24,     Family N25,     Family N26,     Family N27,     Family N28,     Family N29,     Family N30,     Family N31,     Family N32,     Family N33,     Family N34,     Family N35,     Family N36,     Family N37,     Family N38,     Family N39,     Family N40,     Family N41,     Family N42,     Family N43,    
Family N44,     Family N45,     Family N46,     Family N47,     Family N48,    

Family N27

This is a Sequence Logo of Family N27 spoligotypes.
S indicates present spacer, N indicates absent spacer. For more information on sequence logos, 
please click the link at the bottom of this page. Stability = 0.66

NY State NumberNumber of occurrencesProbabilityBinary formatOctal formatLabel given by SpolDB3 modelCountry of origin
NY_S00601 19 1.00 1111111111111111111100000000001100001111111 777777600060771 LAM8 USA
NY_S00507 4 1.00 1111111111111111111100000000000000001111111 777777600000771 LAM8 USA
NY_S00734 2 1.00 1111111111111111111100001100000000000000111 777777606000031 EAI1 USA
NY_S00422 2 0.98 1111111111111111111100001100001100001110111 777777606060731 LAM8 USA
NY_S00269 10 0.98 1111111111111111111100001100001100001111111 777777606060771 LAM8 USA/Zambia
NY_S00355 4 0.98 1111111111111111111000000000000000000111111 777777400000371 LAM8 USA
NY_S00529 6 0.98 1111111111111111111110000000000100001111111 777777700020771 LAM8 USA/Czech
NY_S00444 2 0.94 1000111111111111111100001100001100001100000 437777606060600 LAM8 USA
NY_S00527 3 0.83 1111111111111111111110001000000100001111111 777777704020771 LAM8 USA/Czech
NY_S00365 2 0.68 1111111111111111111100001110000000001111111 777777607000771 LAM9 USA

         The Sequence Logo was created using