SPOTCLUST Complex Families  [Please cite]

This section contains the identified spoligotyping families. Please click here to learn about how a SpolDB3-based model was initialized and here to learn about how Randomly initialized model was seeded.

Family N1,     Family N2,     Family N3,     Family N4,     Family N5,     Family N6,     Family N7,     Family N8,     Family N9,     Family N10,     Family N11,     Family N12,     Family N13,     Family N14,     Family N15,     Family N16,     Family N17,     Family N18,     Family N19,     Family N20,     Family N21,     Family N22,     Family N23,     Family N24,     Family N25,     Family N26,     Family N27,     Family N28,     Family N29,     Family N30,     Family N31,     Family N32,     Family N33,     Family N34,     Family N35,     Family N36,     Family N37,     Family N38,     Family N39,     Family N40,     Family N41,     Family N42,     Family N43,    
Family N44,     Family N45,     Family N46,     Family N47,     Family N48,    

Family N28

This is a Sequence Logo of Family N28 spoligotypes.
S indicates present spacer, N indicates absent spacer. For more information on sequence logos, 
please click the link at the bottom of this page. Stability = 0.65

NY State NumberNumber of occurrencesProbabilityBinary formatOctal formatLabel given by SpolDB3 modelCountry of origin
NY_S00064 2 1.00 1101110000000000001111111111111100001111111 670000777760771 T3 USA
NY_S00339 14 1.00 1111110000000000001111111111111100001111111 770000777760771 T3 USA/Russia
NY_S00981 2 1.00 1111110000000000001111111111111000000011111 770000777740171 T3 USA
NY_S00440 14 1.00 1111111110000000000111111111111100001111111 777000377760771 T3 USA
NY_S00825 2 1.00 1111111110000000000111111111111100001110111 777000377760731 T3 USA
NY_S00566 2 1.00 1111111000000000000111110000000100001111111 774000370020771 T3 USA
NY_S01146 2 0.97 1111111100000000001100001111111100001111111 776000607760771 T3 USA

         The Sequence Logo was created using