SPOTCLUST Complex Families  [Please cite]

This section contains the identified spoligotyping families. Please click here to learn about how a SpolDB3-based model was initialized and here to learn about how Randomly initialized model was seeded.

Family N1,     Family N2,     Family N3,     Family N4,     Family N5,     Family N6,     Family N7,     Family N8,     Family N9,     Family N10,     Family N11,     Family N12,     Family N13,     Family N14,     Family N15,     Family N16,     Family N17,     Family N18,     Family N19,     Family N20,     Family N21,     Family N22,     Family N23,     Family N24,     Family N25,     Family N26,     Family N27,     Family N28,     Family N29,     Family N30,     Family N31,     Family N32,     Family N33,     Family N34,     Family N35,     Family N36,     Family N37,     Family N38,     Family N39,     Family N40,     Family N41,     Family N42,     Family N43,    
Family N44,     Family N45,     Family N46,     Family N47,     Family N48,    

Family N29

This is a Sequence Logo of Family N29 spoligotypes.
S indicates present spacer, N indicates absent spacer. For more information on sequence logos, 
please click the link at the bottom of this page. Stability = 0.60

NY State NumberNumber of occurrencesProbabilityBinary formatOctal formatLabel given by SpolDB3 modelCountry of origin
NY_S00375 4 1.00 1111111100000000000000000000000000000011111 776000000000171 LAM7 USA/NewZealand
NY_S00515 14 1.00 1111111100011100000000000000000000000001111 776160000000071 LAM7 USA
NY_S00314 4 1.00 1111111110000000000000000000000000000111111 777000000000371 Family35 USA/Russia
NY_S00145 12 1.00 1101111101100000000000000000000000000111111 676600000000371 Family35 USA
NY_S00626 3 1.00 1101111101100000000000000000000000001111111 676600000000771 Family35 USA/Czech
NY_S01015 3 1.00 1101111000000000000000000000000000000011111 674000000000171 LAM7 USA
NY_S00771 3 1.00 1111111111110000000000000000000000011110111 777700000001731 Family35 USA
NY_S00663 17 1.00 1111111100011111111000000000000000000011111 776177400000171 LAM7 USA
NY_S01259 2 1.00 1111111111110000000000000000000000000000000 777700000000000 Family35 USA
NY_S00901 2 0.99 1111111111111110000000000000000000001110111 777770000000731 LAM8 USA
NY_S00258 2 0.90 1111111111111111110000000000000000000000011 777777000000011 EAI1 USA

         The Sequence Logo was created using