TB-Lineage Help  [Please cite]




Sample input files

Spoligotype Formats
One of the following formats may be used:
1) Binary with "0" to indicate absence and "1" to indicate presence of spacers. the spoligotype code may have 43 bits
2) Octal form with 15 digits ranging from 0 - 7

MIRU Formats
Depending on the data format selected, please enter the MIRU loci in the order specified in the tables below. Please use the CDC notation for the MIRU (0-9, a-z). If MIRU24 is selected please enter only a single character.
MIRU Loci Set
2412
LociName
154MIRU02
580MIRU04, ETRD
960MIRU10
1644MIRU16
2059MIRU20
2531MIRU23
2687MIRU24
2996MIRU26
3007MIRU27, QUBS
3192MIRU31, ETRE
4348MIRU39
802MIRU40
424Mtub04
577ETRC
1955Mtub21
2163bQUB_11b
2165ETRA
2347Mtub29
2401Mtub30
2461ETRB
3171Mtub34
3690Mtub39
4156QUB_4156
4052QUB26
LociName
154MIRU02
580MIRU04, ETRD
960MIRU10
1644MIRU16
2059MIRU20
2531MIRU23
2687MIRU24
2996MIRU26
3007MIRU27, QUBS
3192MIRU31, ETRE
4348MIRU39
802MIRU40