SPOTCLUST Complex Families
[Please cite]
This section contains the identified spoligotyping families. Please click here to learn about how a SpolDB3-based model was
initialized and here to learn about how Randomly initialized model was seeded.
EAI3,
LAM3,
Haarlem1,
Beijing,
X2,
LAM4,
T4,
X3,
EAI5,
BCG,
Family 34,
Family 33, EAI2,
M. africanum,
Family 36, T3,
LAM9,
LAM8,
Haarlem2,
T1,
LAM10,
Haarlem3, H37Rv,
T2,
X1,
LAM7,
EAI1,
EAI4, S,
LAM1,
LAM2,
LAM5,
M. microti,
LAM6
M. tuberculosis Beijing
Stability = 0.92
| NY State number |
Number of occurrences |
Probability |
Binary description |
Octal description |
Country of origin |
|---|
| NY_S00034 |
890 |
1.00 |
0000000000000000000000000000000000111111111 |
000000000003771 |
USA/Russia/Czech/Singapore/NewZealand/SouthAfrica |
| NY_S00069 |
29 |
1.00 |
0000000000000000000000000000000000111110111 |
000000000003731 |
USA |
| NY_S00200 |
9 |
1.00 |
0000000000000000000000000000000000110111111 |
000000000003371 |
USA/Russia |
| NY_S00366 |
3 |
1.00 |
0000000000000000000000000000000000110000111 |
000000000003031 |
USA |
| NY_S00535 |
5 |
1.00 |
0000000000000000000000000000000000111101111 |
000000000003671 |
USA |
| NY_S00902 |
2 |
1.00 |
0000000000000000000000000000000000111111011 |
000000000003751 |
USA |
| NY_S00220 |
4 |
1.00 |
0000000000000000000000000000000000110011111 |
000000000003171 |
USA |
| NY_S00395 |
5 |
1.00 |
0000000000000000000000000000000000111110011 |
000000000003711 |
USA |
| NY_S00842 |
2 |
1.00 |
0000000000000000000000000000000000111100111 |
000000000003631 |
USA |
| NY_S00670 |
4 |
1.00 |
0000000000000000000000000000000000100011111 |
000000000002171 |
USA |
| NY_S00199 |
21 |
0.93 |
0000000000000000000000000000000000001111111 |
000000000000771 |
USA/Russia |
| NY_S00226 |
8 |
0.93 |
0000000000000000000000000000000000001110111 |
000000000000731 |
USA |
| NY_S00751 |
3 |
0.93 |
0000000000000000000000000000000000000111111 |
000000000000371 |
USA |
The Sequence Logo was created using
