SPOTCLUST Complex Families
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This section contains the identified spoligotyping families. Please click here to learn about how a SpolDB3-based model was
initialized and here to learn about how Randomly initialized model was seeded.
EAI3,
LAM3,
Haarlem1,
Beijing,
X2,
LAM4,
T4,
X3,
EAI5,
BCG,
Family 34,
Family 33, EAI2,
M. africanum,
Family 36, T3,
LAM9,
LAM8,
Haarlem2,
T1,
LAM10,
Haarlem3, H37Rv,
T2,
X1,
LAM7,
EAI1,
EAI4, S,
LAM1,
LAM2,
LAM5,
M. microti,
LAM6
M. africanum
Stability = 0.71
| NY State Number | Number of occurrences | Probability | Binary format | Octal format | Country of origin |
|---|
| NY_S00046 |
11 |
1.00 |
1111111000001111111100001111111111110001111 |
774077607777071 |
USA/Nigeria/SierraLeone
|
| NY_S01006 |
2 |
1.00 |
1011111000001111111100001111111111110001111 |
574077607777071 |
USA
|
| NY_S00508 |
2 |
1.00 |
1111111000001111111100001101111101110001111 |
774077606767071 |
USA
|
| NY_S00040 |
6 |
1.00 |
1111111000001111111111111111111111110001111 |
774077777777071 |
USA/Nigeria/SierraLeone
|
| NY_S00039 |
2 |
1.00 |
1111111000001111111111111111111111010001111 |
774077777775071 |
USA/SierraLeone
|
| NY_S01313 |
2 |
1.00 |
1111000000001111111111111111111111111101111 |
740077777777671 |
USA
|
| NY_S00044 |
6 |
1.00 |
1111110001111111111110001111111111111101111 |
770777707777671 |
USA/Guinea
|
| NY_S01090 |
3 |
1.00 |
1111110001111111111010001111111111111101111 |
770777507777671 |
USA
|
| NY_S00600 |
2 |
1.00 |
1110000000000000000111111111111111101101111 |
700000377776671 |
USA
|
| NY_S00042 |
2 |
1.00 |
1111110001100111111111111111111101111101111 |
770637777767671 |
USA/Guinea
|
| NY_S00026 |
15 |
1.00 |
1111110001111111111111111111111111111101111 |
770777777777671 |
USA/Nigeria/SierraLeone
|
| NY_S00043 |
7 |
1.00 |
1111110001111111111111111111111101111101111 |
770777777767671 |
USA/Guinea
|
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