SPOTCLUST Complex Families  [Please cite]

This section contains the identified spoligotyping families. Please click here to learn about how a SpolDB3-based model was initialized and here to learn about how Randomly initialized model was seeded.

SpolDB3-based model
Randomly initialized model


EAI3,     LAM3,    Haarlem1,    Beijing,   X2,    LAM4,    T4,    X3,   EAI5,   BCG,    Family 34,   Family 33,  EAI2,   M. africanum,    Family 36,  T3,   LAM9,   LAM8,   Haarlem2,   T1,   LAM10,   Haarlem3,  H37Rv,   T2,   X1,   LAM7,   EAI1,   EAI4,  S,   LAM1,   LAM2,   LAM5,   M. microti,    LAM6



M. tuberculosis T2

This is a Sequence Logo of T2 spoligotypes. S indicates present spacer, N indicates absent spacer. For more information on sequence logos, please click the link at the bottom of this page. Stability = 0.45

NY State NumberNumber of occurrencesProbabilityBinary descriptionOctal descriptionCountry of origin
NY_S00303 2 1.00 1111111111000011111110111111110000000000000 777417737700000 USA
NY_S00246 11 1.00 1111111111111111111111111111110000000000000 777777777700000 USA
NY_S00913 3 1.00 1111111111111111111111111111111100001000000 777777777760400 USA
NY_S00904 3 1.00 1111111111111111111111111111111100001100000 777777777760600 USA
NY_S00203 3 0.98 1111111111110111111111111111111100001110000 777737777760700 USA
NY_S00202 26 0.98 1111111111111111111111111111111100001110000 777777777760700 USA
NY_S00914 5 0.89 1111111111111111111111111111110000000000011 777777777700011 USA
NY_S00054 2 0.86 1110111111111111111111111111111100001100010 737777777760610 USA
NY_S00805 2 0.66 1111111111111111111111111111111100000000011 777777777760011 USA

         The Sequence Logo was created using