SPOTCLUST Complex Families  [Please cite]

This section contains the identified spoligotyping families. Please click here to learn about how a SpolDB3-based model was initialized and here to learn about how Randomly initialized model was seeded.

SpolDB3-based model
Randomly initialized model


EAI3,     LAM3,    Haarlem1,    Beijing,   X2,    LAM4,    T4,    X3,   EAI5,   BCG,    Family 34,   Family 33,  EAI2,   M. africanum,    Family 36,  T3,   LAM9,   LAM8,   Haarlem2,   T1,   LAM10,   Haarlem3,  H37Rv,   T2,   X1,   LAM7,   EAI1,   EAI4,  S,   LAM1,   LAM2,   LAM5,   M. microti,    LAM6



M. tuberculosis LAM5

This is a Sequence Logo of LAM5 spoligotypes. S indicates present spacer, N indicates absent spacer. For more information on sequence logos, please click the link at the bottom of this page. Stability = 0.15

NY State NumberNumber of occurrencesProbabilityBinary formatOctal formatCountry of origin
NY_S00266 36 0.98 1111111111110111111100001111110000001111111 777737607700771 USA
NY_S00616 2 0.98 1111111111110111111100001111110000000011111 777737607700171 USA
NY_S00344 5 0.81 1101111111110111111100001111110000001111111 677737607700771 USA

         The Sequence Logo was created using