SPOTCLUST Complex Families  [Please cite]

This section contains the identified spoligotyping families. Please click here to learn about how a SpolDB3-based model was initialized and here to learn about how Randomly initialized model was seeded.

SpolDB3-based model
Randomly initialized model


EAI3,     LAM3,    Haarlem1,    Beijing,   X2,    LAM4,    T4,    X3,   EAI5,   BCG,    Family 34,   Family 33,  EAI2,   M. africanum,    Family 36,  T3,   LAM9,   LAM8,   Haarlem2,   T1,   LAM10,   Haarlem3,  H37Rv,   T2,   X1,   LAM7,   EAI1,   EAI4,  S,   LAM1,   LAM2,   LAM5,   M. microti,    LAM6



M. tuberculosis LAM10

This is a Sequence Logo of LAM10 spoligotypes. S indicates present spacer, N indicates absent spacer. For more information on sequence logos, please click the link at the bottom of this page. Stability = 0.57

NY State NumberNumber of occurrencesProbabilityBinary formatOctal formatCountry of origin
NY_S00282 64 0.98 1111111111111111111111000111111100001111111 777777743760771 USA/Czech/Russia/Nigeria
NY_S01256 2 0.98 1111111111111111110011000111111100001111111 777777143760771 USA
NY_S01011 2 0.98 1111111111111111111111000111001100001111111 777777743460771 USA
NY_S00869 2 0.98 1111111111111111111111000111001000001111111 777777743440771 USA
NY_S00208 3 0.98 1111111111111111111111000111111100001110111 777777743760731 USA/India

         The Sequence Logo was created using