SPOTCLUST Complex Families  [Please cite]

This section contains the identified spoligotyping families. Please click here to learn about how a SpolDB3-based model was initialized and here to learn about how Randomly initialized model was seeded.

SpolDB3-based model
Randomly initialized model


EAI3,     LAM3,    Haarlem1,    Beijing,   X2,    LAM4,    T4,    X3,   EAI5,   BCG,    Family 34,   Family 33,  EAI2,   M. africanum,    Family 36,  T3,   LAM9,   LAM8,   Haarlem2,   T1,   LAM10,   Haarlem3,  H37Rv,   T2,   X1,   LAM7,   EAI1,   EAI4,  S,   LAM1,   LAM2,   LAM5,   M. microti,    LAM6



M. tuberculosis EAI1

This is a Sequence Logo of EAI1 spoligotypes. S indicates present spacer, N indicates absent spacer. For more information on sequence logos, please click the link at the bottom of this page. Stability = 0.40

NY State NumberNumber of occurrencesProbabilityBinary formatOctal formatCountry of origin
NY_S00538 5 1.00 1111000001111111111101111100000000000000011 740777676000011 USA
NY_S00606 3 1.00 0000111111100000111100001111000000000000011 037603607400011 USA
NY_S00275 2 1.00 1110000000001111101111100000000000000000011 700076760000011 USA
NY_S00258 2 1.00 1111111111111111110000000000000000000000011 777777000000011 USA
NY_S00871 4 1.00 1111111111111111111001111111000000000000001 777777477400001 USA
NY_S00734 2 1.00 1111111111111111111100001100000000000000111 777777606000031 USA
NY_S00147 4 0.98 1111111111111111111111100000000000000000111 777777760000031 USA

         The Sequence Logo was created using