SPOTCLUST Complex Families
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This section contains the identified spoligotyping families. Please click here to learn about how a SpolDB3-based model was
initialized and here to learn about how Randomly initialized model was seeded.
EAI3,
LAM3,
Haarlem1,
Beijing,
X2,
LAM4,
T4,
X3,
EAI5,
BCG,
Family 34,
Family 33, EAI2,
M. africanum,
Family 36, T3,
LAM9,
LAM8,
Haarlem2,
T1,
LAM10,
Haarlem3, H37Rv,
T2,
X1,
LAM7,
EAI1,
EAI4, S,
LAM1,
LAM2,
LAM5,
M. microti,
LAM6
M. tuberculosis X2
Stability = 0.88
| NY State Number | Number of occurrences | Probability | Binary description | Octal description | Country of origin |
|---|
| NY_S00009 |
317 |
1.00 |
1111111111111111101111111111111100001100001 |
777776777760601 |
USA |
| NY_S00131 |
2 |
1.00 |
1111101111111111101111111111111100001100001 |
767776777760601 |
USA |
| NY_S00300 |
9 |
1.00 |
1111111111111011101111111111111100001100001 |
777756777760601 |
USA |
| NY_S00320 |
2 |
1.00 |
1111111111111110101111111111111100001100001 |
777772777760601 |
USA |
| NY_S00008 |
2 |
1.00 |
1111111110111111101111111111111100001100001 |
777376777760601 |
USA |
| NY_S00071 |
2 |
1.00 |
1101111111111111101111111111111100001100001 |
677776777760601 |
USA |
| NY_S00134 |
8 |
1.00 |
1100011111111111101111111111111100001100001 |
617776777760601 |
USA |
| NY_S00140 |
9 |
1.00 |
1111111111110111101111111111111100001100001 |
777736777760601 |
USA/NewZealand/SouthAfrica |
| NY_S00782 |
2 |
1.00 |
1011111111110111101111111111111100001100001 |
577736777760601 |
USA |
| NY_S00141 |
11 |
1.00 |
1111110000111111101111111111111100001100001 |
770376777760601 |
USA |
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