SPOTCLUST Complex Families  [Please cite]

This section contains the identified spoligotyping families. Please click here to learn about how a SpolDB3-based model was initialized and here to learn about how Randomly initialized model was seeded.

SpolDB3-based model
Randomly initialized model


Family N1,     Family N2,     Family N3,     Family N4,     Family N5,     Family N6,     Family N7,     Family N8,     Family N9,     Family N10,     Family N11,     Family N12,     Family N13,     Family N14,     Family N15,     Family N16,     Family N17,     Family N18,     Family N19,     Family N20,     Family N21,     Family N22,     Family N23,     Family N24,     Family N25,     Family N26,     Family N27,     Family N28,     Family N29,     Family N30,     Family N31,     Family N32,     Family N33,     Family N34,     Family N35,     Family N36,     Family N37,     Family N38,     Family N39,     Family N40,     Family N41,     Family N42,     Family N43,    
Family N44,     Family N45,     Family N46,     Family N47,     Family N48,    



Family N23

This is a Sequence Logo of Family N23 spoligotypes. S indicates present spacer, N indicates absent spacer. For more information on sequence logos, please click the link at the bottom of this page. Stability = 0.71

NY State NumberNumber of occurrencesProbabilityBinary formatOctal formatLabel given by SpolDB3 modelCountry of origin
NY_S00871 4 1.00 1111111111111111111001111111000000000000001 777777477400001 EAI1 USA
NY_S00538 5 1.00 1111000001111111111101111100000000000000011 740777676000011 EAI1 USA
NY_S00246 11 1.00 1111111111111111111111111111110000000000000 777777777700000 T2 USA
NY_S00303 2 1.00 1111111111000011111110111111110000000000000 777417737700000 T2 USA
NY_S00914 5 1.00 1111111111111111111111111111110000000000011 777777777700011 T2 USA

         The Sequence Logo was created using