SPOTCLUST Complex Families  [Please cite]

This section contains the identified spoligotyping families. Please click here to learn about how a SpolDB3-based model was initialized and here to learn about how Randomly initialized model was seeded.

SpolDB3-based model
Randomly initialized model


Family N1,     Family N2,     Family N3,     Family N4,     Family N5,     Family N6,     Family N7,     Family N8,     Family N9,     Family N10,     Family N11,     Family N12,     Family N13,     Family N14,     Family N15,     Family N16,     Family N17,     Family N18,     Family N19,     Family N20,     Family N21,     Family N22,     Family N23,     Family N24,     Family N25,     Family N26,     Family N27,     Family N28,     Family N29,     Family N30,     Family N31,     Family N32,     Family N33,     Family N34,     Family N35,     Family N36,     Family N37,     Family N38,     Family N39,     Family N40,     Family N41,     Family N42,     Family N43,    
Family N44,     Family N45,     Family N46,     Family N47,     Family N48,    



Family N40

This is a Sequence Logo of Family N40 spoligotypes. S indicates present spacer, N indicates absent spacer. For more information on sequence logos, please click the link at the bottom of this page. Stability = 0.38

NY State NumberNumber of occurrencesProbabilityBinary formatOctal formatLabel given by SpolDB3 modelCountry of origin
NY_S00357 7 1.00 1110001000000000110111001111111100001001111 704003347760471 T3 USA
NY_S00600 2 1.00 1110000000000000000111111111111111101101111 700000377776671 M. africanum USA
NY_S00804 2 1.00 0000000000000000000000001111111111111111111 000000007777771 Family36 USA
NY_S00576 3 1.00 1110000000000000000000001110011111111111111 700000007177771 Family36 USA

         The Sequence Logo was created using